Research Diary

7 Responses to “Collection of Information on Hidden Markov Chains”

1. 1 Orhan Apr 11th, 2007 at 11:34 am

   A nice introduction from a Stanford Robotics Class thought be Serafim, who I knew a leather jacket wearing, long haired Greek guy at school doing his PhD at the same time as I did mine.

   Here is the link to the pdf file:

   http://robotics.stanford.edu/~serafim/cs262/Spring2003/Notes/ln4.pdf

2. 2 Orhan Apr 11th, 2007 at 1:08 pm

   This is another intro to Hidden Markov Chains with some examples in Bioinformatics. Interesting read and case studies. Here is the link:

   http://titan.biotec.uiuc.edu/cs491jh/slides/hmm.ppt

3. 3 Orhan Apr 11th, 2007 at 1:21 pm

   A more formal analysis of HMMs again with some case studies.

   http://www.math.chalmers.se/~olleh/Markov_Karlsson.pdf

4. 4 Orhan Apr 11th, 2007 at 1:26 pm

   A very detailed analysis of HMMs with emphasis on Protein motifs.

   http://www.cbse.ucsc.edu/staff/haussler_pubs/hmm.part1.pdf
   http://www.cbse.ucsc.edu/staff/haussler_pubs/hmm.part2.pdf

   Good examples and analysis.

5. 5 Orhan Apr 11th, 2007 at 1:30 pm

   A collection of links and software for HMMs

   http://www.marypat.org/stuff/random/markov.html

6. 6 Orhan Apr 11th, 2007 at 1:33 pm

   Another collection of links and software for HMMs. This one has useful Excel spreadsheet links for teaching HMMs.

   http://www.cs.ubc.ca/~murphyk/Software/HMM/hmm.html

7. 7 Orhan Apr 12th, 2007 at 1:30 pm

   More Software on Bayesian Network Toolbox for matlab

   http://bnt.sourceforge.net/

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